==================== MethDB email submission form ====================== -- please copy the form into your email program, fill in the data and -- -- return the form to submit@methdb.de -- * = information is required for submission -> = check MethDB if this information is already present (in case of doubt contact the author) ======================================================================== AUTHORSHIP:-------------------------------------------------------- *full name: affiliation: country: pcode: city: phone: *email: personal login: -> CROSS REFERENCE:--------------------------------------------------- If the submitted data has been published elsewhere please indicate the PubMed ID or the authors,title and the journal. USED METHOD:------------------------------------------------------- *method name: -> *description: -> where published: PCR (if used):----------------------------------------------------- *primers: *primer start: (relative to the sequence submitted below) conditions: RESTRICTION ENZYMES (if used):------------------------------------- *enzymes: INFORMATION ABOUT THE INVESTIGATED INDIVIDUAL:--------------------- arbitrary name: *species: strain: sex: male/female/hermaphrodite/neutral where published: THE GENE OR LOCUS THAT WAS INVESTIGATED:(if applicable)------------ *investigated gene: chromosome: map: gene product: (GenBank etc.) where published: INVESTIGATED SEQUENCE:(if applicable)------------------------------ *sequence: (in FASTA format; if PCR amplified, sequence between the primers, without the primers) 5' neighbour: -> 3' neighbour: -> complement: -> where published: (GenBank etc.) comment: INFORMATION ABOUT THE SAMPLE:-------------------------------------- sample name: *phenotype: -> phenotype descr.: -> *developm. state: (adult, juvenile, culture cell, malign tumor, etc.) age: birth: before/after noticeable changes: *tissue: expression(0..1): comments: RESULTS:----------------------------------------------------------- (total methylation) *units: *5mC content: st.error: G+C content: (sequence specific methylation) *molecules: single/multiple *strand: single/double Table:(values separated by ",") ------------------------------- position1 , degree of methylation (0..1) , st.error position2 , degree of methylation (0..1) , st.error position3 , degree of methylation (0..1) , st.error ... comment: positions -- according to the submitted sequence in base pairs degree of methylation -- between 0 (no methylation) and 1 (full methylation) st.error -- standard error of the methylation degree (0..1) OR Sequence: --------- sequence in FASTA format, all nucleotides except 5mC in lower case letters, 5mC written as upper case C example: >comment atgatcgatgctgctagcgatgctagCgacgatcgaCgataggatggat... Multiple sequences are possible when they were generated in the same experiment. Please note that the required sequence format can be generated by submission of Bisulphite generated sequence files to the MethTools web page: http://methdb.univ-perp.fr/methtools/MethTools2_submit.html ======================================================================= Thank you for completing the submission form. Your data will be parsed and incorporated into MethDB. Please do no hesitate to contact the author in case of problems accessing the database or if you have comments on the contents and the layout of MethDB. ======================= http://www.methdb.net ==========================